Donald GemanProfessor Applied Mathematics and Statistics http://www.cis.jhu.edu/people/faculty/geman/ (primary) Clark Hall 302A (office) 410-516-7678 () geman@jhu.edu (primary) Staff Contact: Dawn Kilheffer dawn@cis.jhu.edu 410-516-4400 |
Education
| Ph.D 1966, Northwestern University |
| B.A. 1965, University of Illinois |
Experience
| 2001: Johns Hopkins University, Department of Applied Mathematics and Statistics, Professor |
| 2000: Center for Applied Mathematics and its Applications, Ecole Superieure Nationale de Cachan, France |
| 1970-2001: Professor, Department of Mathematics and Statistics, University of Massachusetts |
| 2000-2000: Institution/Company Name, Title, (description optional) |
| 1997-1999: Institution/Company Name, Title, (description optional) |
| : Institution/Company Name, Title, (description optional) |
Journal Articles
| Yoruk, E., Ochs, M., Geman, D., Younes, L. (2011). A Comprehensive Statistical Model for Cell Signaling. IEEE/ACM transactions on computational biology and bioinformatics/IEEE, ACM. |
| Fleuret, F., Li, T., Dubout, C., Wampler, E.K., Yantis, S., Geman, D. (2011). Comparing Machines and Humans on a Visual Categorization Test. PNAS. |
| Slama, P., Geman, D. (2010). Identification of family-determining residues in PHD fingers. Nucleic Acids Research. |
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Leek, J., Scharpf, R., Bravo, H., Simcha, D., Langmead, B., Johnson, W., Geman, D., Baggerly, K., Irizarry, R. (2010). Tackling the widespread and critical impact of batch effects in high-throughput data. Nature Reviews Genetics. 11(10). 733-739. DOI » View record in Web of Science SM |
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Eddy, J., Hood, L., Price, N., Geman, D. (2010). Identifying Tightly Regulated and Variably Expressed Networks by Differential Rank Conservation (DIRAC). Plos Computational Biology. 6(5). DOI » View record in Web of Science SM |
Conference Proceedings
| Geman, D., Afsari, B., Tan, A., Naiman, D. "Microarray classification from several two-gene expression comparisons", Proceedings ICMLA 2008, 2008. |
| Fereacatu, M., Geman, D. "Interactive Search for Image Categories by Mental Matching", Proceedings ICCV 2007, 2007. |
| Gangaputra, S., Geman, D. "A design principle for coarse-to-fine classification", 2006, vol.2, pp.1877-1884. |
| Geman, D. "Gene expression comparisons for class prediction in cancer studies", Proceedings 36th Symposium on the Interface: Computing Science and Statistics, 2004. |
| Fan, X., Geman, D. "Hierarchical object indexing and sequential learning", Proceedings ICPR 2004, 2004, vol.3, pp.65-68. |
Awards & Honors
| 2011: Fellow, SIAM (Society for Industrial and Applied Mathematicians) |
| 1998: Fellow, IMS (Institute of Mathematical Statistics) |
Presentations
| "Learning Graphical Models by Competitive Assembly of Marginals," IMA, Minneapolis, MN, October 26, 2011 |
| "Image Interpretation by Entropy Pursuit", Plenary Lecture, German Pattern Recognition Association (DAGM), Frankfurt, Germany, August 31, 2011 |
| "Interactive Search for Image Categories by Mental Matching", Workshop on Frontiers in Vision, MIT, Boston, MA., August 24, 2011 |
| "Order Statistics, Marker Interactions and Molecular Medicine," Joint Statistical Meetings, Miami, FL., August 4, 2011 |
| "Measuring Network Regulation and Differential Expression by Rank Conservation", Keynote Address, MCBIOS 2011, College Station, TX, April 1, 2011 |
| "Computational Molecular Medicine," Department of Mathematics, ETH Zurich, Switzerland, May 11, 2010 |
| "Towards Translational Cancer Bioinformatics," Clinical Research Grand Rounds, School of Medicine, Johns Hopkins University, April 21, 2010 |
| Stationary Features and Cat Detection NIPS 2007. Whistler, BC. 2007-12-08. (Invited), December 8, 2007 |
| Interactive Search for Image Categories by Mental Matching SIAM Meeting. Baltimore, MD. 2007-11-14. (Invited), November 14, 2007 |
| Image Interpretation: A Critical Overview Distinguished Lecture Series. University of California - San Diego. 2007-03-16. (Invited), March 16, 2007 |
| Image Interpretation ONR Workshop. Alexandria, VA. 2007-03-02. (Invited), March 2, 2007 |
| Interactive Image Retrieval by Mental Matching Multimedia Image Retrieval (MIR06). Santa Barbara, CA. 2006-10-26. (Invited), October 26, 2006 |
| In Search of a Unifying Theory for Image Interpretation Annual Meeting, Norwegian Soceity for Image Processing . Oslo, Norway. 2006-09-07. (Invited), September 7, 2006 |
| In Search of a Unifying Theory for Image Interpretation Annual International Symposium on Information Theory. Seattle, WA. 2006-07-14. (Invited), July 14, 2006 |
| Coarse-to-fine Hierarchies Visual Learning and Recognition Workshop. IMA, Minneapolis, MN. 2006-05-23. (Invited), May 23, 2006 |
| Small-sample Learning in Computational Biology and Vision Snowbird Learning Conference. Snowbird, Utah. 2006-04-05. (Invited), April 5, 2006 |
| Efficiency-driven Computational Vision Stochastic Systems Conference. Notre Dame University. 2006-03-25. (Invited), March 25, 2006 |
| Efficiency-driven Computational Vision SCI Distinguished Lecture Series. University of Utah. 2006-03-17. (Invited), March 17, 2006 |
| A Statistical Framework for Coarse-to-Fine Classification . Caltech. 2005-12-13. (Invited), December 13, 2005 |
| Course-to-Fine Classification and Scene Analysis . Los Alamos National Laboratory. 2005-11-10. (Invited), November 10, 2005 |
| Coarse-to-Fine Classification and Scene Interpretation . New York University, Department of Computer Science. 2005-11-04. (Invited), November 4, 2005 |
| Interactive Mental Picture Retrieval . University of Maryland Baltimore County. 2005-10-21. (Invited), October 21, 2005 |
| Image Retrieval from a Mental Picture AMS Seminar. JHU. 2005-09-23. (Invited), September 23, 2005 |
| Audio- and Video-Based Biometric Person Authentication AVBPA 2005. Rye, New York. 2005-07-21. (Invited), July 21, 2005 |
| Statistical Analysis of Postgenomic Data Institut National Agronomique. Paris, France. 2005-04-21. (Invited), April 21, 2005 |
| Workship on Pattern Classification , Learning and Object Recognition MSRI. Berkeley, CA. 2005-03-21. (Invited), March 21, 2005 |
| Introductory Workshop: Mathematical, Computational and Statistical Aspects of Image Analysis MSRI. Berkeley, California. 2005-01-24. (Invited), January 24, 2005 |
| Workshop on Object Recognition . Taromina, Sicily. 2004-10-00. (Invited), September 30, 2004 |
| BME Freshman Lecture . JHU. 2004-09-23. (Invited), September 23, 2004 |
| Advanced Concepts for Intelligent Vision Systems ACIVS04. Brussels, Belgium. 2004-08-31. (Invited), August 31, 2004 |
| Bodian Lecture . JHU Mind Brain Institute. 2004-05-03. (Invited), May 3, 2004 |
| Presentation . JHUSPH. 2004-04-28. (Invited), April 28, 2004 |
| Presentation on the Center for Imaging Science BME Advisory Council Meeting. JHU SOM. 2004-04-27. (Invited), April 27, 2004 |
| Rank-Based Classification of Gene Expression Profiles AMS Seminar. JHU. 2004-04-22. (Invited), April 22, 2004 |
| Whitaker Site Visit . . 2004-03-18. (Invited), March 18, 2004 |
| Perception in Artificial and Natural Systems Meeting of the Mathematical Association of America. Baltimore, MD. 2003-11-07. (Invited), November 7, 2003 |
| Hierarchical Designs for Pattern Recognition Copmutational Sciences Lecture Series: Computational Vision and Image Analysis. University of Wisconsin, Madison, WI. 2003-10-30. (Invited), October 30, 2003 |
| Hierarchical Testing Designs for Pattern Recognition Mathematics Day, Institute of Mathematics. Academia Sinica, Taipei, Taiwan. 2003-09-03. (Invited), September 3, 2003 |
| Hierarchical Designs for Pattern Recognition DIMACS Workship on Complexity and Inference. Rutgers University, NJ. 2003-06-03. (Invited), June 3, 2003 |
| Hierarchical Testing Designs for Pattern Recognition ETH. Zurich, Switzerland. 2003-05-23. (Invited), May 23, 2003 |
| Computational Modeling EURANDOM Workshop: "Statistical Learning in Classificaiton and Model Selection". Eindhoven, Netherlands. 2003-01-18. (Invited), January 18, 2003 |
| Hierarchical Designs for Object Identification SIAM Minisymposium, Joint Mathematics Meetings. Baltimore, MD. 2003-01-16. (Invited), January 16, 2003 |
| Sequential Testing Strategies for Object Identification Statistics Colloquium. University of Michigan. 2002-11-15. (Invited), November 15, 2002 |
| Computational Modeling Applied Mathematics Colloquium. Cornell University. 2002-10-17. (Invited), October 17, 2002 |
| Computational Modeling A. Rosenfeld Distinguished Lecture Series. University of Maryland. 2002-10-16. (Invited), October 16, 2002 |
| Statistical Methods and Learning in Computer Vision SIAM 2002 Annual Meeting. Philadelphia, PA. 2002-07-09. (Invited), July 9, 2002 |
| When is Coarse-to-Fine Search Optimal? International Workshop on Energy Minimization Methods in Computer Vision. Sophia Antipolis, France. 2001-09-00. (Invited), August 31, 2001 |
| Interrogation Bayesienne d'une Base de Donnees 33rd Journees de Statistique. Nantes, France. 2001-05-00. (Invited), April 30, 2001 |
| Coarse-to-Fine Classification and Visual Recognition Mathematical Sciences Research Institute Workshop. Berkeley, CA. 2001-03-00. (Invited), February 28, 2001 |
Committees
| 2011: Board of Review, Academic Council |
| 2011: Freshman Book Committee |
| 2011 - 2011: GBO Committee, Puyang Xu, ECE |
| 2011 - 2011: GBO Committee, Thomas Reppert, BME |
| 2011 - 2011: GBO Committee, Sarah Pekny, BME |
| 2010 - 2010: GBO Committee, Yongjin Park, BME |
| 2007 - 2010: Miscellaneous GBO Committees, ECE,BME,AMS |
| 2006 - 2007: Academic Affairs Committee, AMS |
| 2006 - 2006: Introductory Exam Committee, AMS |
| 2006 - 2006: GBO Exam, Wen Wu, AMS |
| 2006 - 2006: GBO Exam, Yan Qi, BME |
| 2006 - 2006: ICM Hiring Committee |
| 2004 - 2004: WSE Dean's Search Committee |
| 2004 - 2004: Member, Department Curriculum Committee |
| 2004 - 2004: GBO Committee, Xiaodong Fan, May 5, 2004 |
| 2004 - 2004: GBO Committee, Iman El-Shehaby, July 7, 2004 |
| 2004 - 2004: GBO Committee, Charles Wright, December 10, 2004 |
| 2004 - 2004: Organizer, CIS Seminar Series 2003-2004 |
| 2003 - 2003: Ph.D. Committee, Vivian Yuan, Department of Applied Mathematics and Statistics |
| 2003 - 2003: WSE Curriculum Committee |
| 2003 - 2003: GBO Committee: Christian D'Avignon, BME |
| 2003 - 2003: GBO Committee, Kerry Zesker, Astrophysics |
| 2003 - 2003: Editor, Exponent, Fall 2003 |
| 2002 - 2002: Scientific Committee of Various Conferences |